The Tech Poised to Disrupt a $30 Billion Market
For over a century, pathology has relied on glass slides, wax blocks, and an assembly line of expensive equipment manned by an army of trained lab techs just to generate a single diagnostic image. But what if we no longer needed the slide at all? What if we could skip the entire process and go straight from patient to pathologist?
As we continue the series on digital pathology, I’m excited to introduce you to a technology that I suspect almost none of you have heard about. A revolution is coming to pathology, one that sounds like science fiction but is much farther along in commercial readiness than most realize. This technology is one that will eliminate the most time consuming and laborious parts of the pathology workflow. Today we are talking about the so-called “slide-free histology” or “direct-to-digital” technologies that aim to deliver highly diagnostic digital histopathology images directly from the tissue, without needing to make slides at all.
Before you dismiss this as just research-world technology that won’t actually replace our current methods, I’ll give you a teaser image below to show you just how good this technology already is.
Seriously, can you believe how good this image is?
If you’re a pathologist seeing the quality of this image that was generated straight from the tissue with no slide creation, I know your mouth is hanging open and you’re thinking, “Wait, that’s beautiful”. And you’re right. It’s incredible. (You’re already eager for more, I know. Hang tight, many more will come in Part 2!)
What is Slide-Free Histology?
Slide-free histology (aka “slide-free microscopy” or “direct-to-digital pathology”) techniques are those that enable direct imaging of fresh or formalin-fixed, unsectioned tissue, eliminating the need for traditional slide preparation. These emerging approaches, which we will explore in Part 2, aim to generate high-quality, diagnostic images comparable to conventional H&E slides while significantly reducing time and labor through novel imaging technologies.
In this Part 1 we’ll introduce the concept of slide-free histology. In Part 2 we’ll do a deep dive into the various slide-free histology techniques. In Part 3 we’ll discuss the companies leading the charge in bringing this technology to the world.
The Traditional Histology Lab Workflow: A time-consuming bottleneck
While digital slide scanning adoption in veterinary medicine accelerated in 2014 and was widely adopted in subsequent years, human pathology- due to its more complex regulatory and infrastructure constraints- is still struggling through the process. Part of the challenge is also the fact that conversion to digital slide scanning often adds cost to the workflow with only minimal improvements in efficiency and turnaround time. Digitization of glass slides was a predictable evolution, not a radical leap. It made pathology more convenient, but it didn’t solve its core bottlenecks. While digitization completely transformed radiology and cytology workflows-turning them into point-of-care tests with results possible in minutes to just a couple of hours- for histopathology the impact was much less significant. Histopathology, even though digitized, still requires this century-old, labor intensive, lengthy laboratory process of creating glass slides, with no option for images to go directly from patient to pathologist without this clunky histo lab workflow an intermediary.
Although digital, histopathology still has a labor intensive, slow workflow
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Before we talk about how slide-free histology changes everything, let’s be brutally honest: the traditional process is slow, labor-intensive, expensive, and outdated. Here’s why:
Details of the Histopathology Workflow
- Tissue Collection and Fixation (12-24 hours)- A biopsy tissue sample is placed in formalin to prevent decomposition. Fixation cross links proteins to preserve cellular structures for microscopic examination.
Challenges:
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- Fixation takes at least 6-12 hours, usually overnight in most labs, to fully penetrate tissue. This requirement prevents point of care or intra-operative histopath options.
- Larger or fatty tissues require even longer fixation times.
- Formalin negatively impacts DNA and RNA quality and thus is a barrier to molecular diagnostic opportunities.
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Shipping (12-24+ hours)- Jars of formalin fixed tissue must be packaged and shipped to the lab. This usually consists of packaging, scheduling courier pickup, utilizing Fedex/UPS, and often involves air shipping.
Challenges:
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- Formalin is dangerous, and leakage is not uncommon while shipping, posing a health hazard. Leakages are also a common source of package delays and fines.
- Formalin and tissue can freeze in cold weather, creating tissue artifacts.
- Lost packages just happen, and it’s a terrible thing for the patient.
- Grossing (5-20 minutes)- Formalin fixed tissue must be trimmed to select regions of interest that will fit within histology cassettes.
- Tissue Processing and Embedding (6-12 hours)- The fixed tissue is placed into a series of alcohol baths to dehydrate it, followed by xylene, and finally by paraffin wax impregnation. After processing, the tissue is embedded in a wax block to provide structural support for sectioning.
Challenges:
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- Processing and embedding is a lengthy process that requires multiple chemical steps and expensive equipment
- Overprocessing can make tissues brittle and can also destroy tissues, while under processing leaves them soft
- Trained histotechnolologists are required to properly orient and embed tissue in paraffin.
- Microtomy (sectioning) (30-60 minutes per batch)- The paraffin block is placed in a microtome (think deli meat slicer but for histology labs) where it’s sliced into ultra-thin sections (3-5 microns thick). Sections are then floated in a warm water bath, carefully transferred onto glass slides, and dried.
Challenges:
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- It’s a manual process, not easily automated.
- Tissue sections are fragile and can tear or break if not handled carefully.
- Staining and coverslipping (1-2 hours)- slides are stained, usually using Hematoxylin and Eosin (H&E) to highlight cellular structures. Slides are then coverslipped with mounting medium.
Challenges:
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- Requires expensive equipment
- Staining must be consistent, variability leads to diagnostic errors
- Coverslipping can create artifacts such as air bubbles, making slides unreadable.
- Digital Slide Scanning (6-20 hours per batch)– slides are loaded into digital slide scanners in batches. Scanning time varies based on scanner model, batch size, and magnification (20x vs. 40x).
Challenges:
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- Scanners are expensive, with mid to high volume scanners ranging from $100k-400k each. Multiple scanners are often required per lab.
- Although scanners are rapidly getting faster, this step is added time on top of the traditional histopathology workflow, requiring anywhere from 6-20 hours to scan an entire batch of slides in a moderately sized lab.
- Diagnostic quality of slides are sometimes affected by small slide/tissue artifact, excessive coverslip medium, and barcode size/position issues.
So, what’s wrong with the traditional histopathology workflow?
- Lengthy– requires many steps, time consuming—> Delays in reporting are common, especially in human pathology.
- Labor intensive– requires many manual steps and highly trained and experienced personnel that are hard to find. There is only so much automation that can be implemented.
- Expensive equipment– there are several large pieces of machinery that are required that make this an expensive lab to set up. To make more efficient by adding automation is even more expensive.
- No point of care potential– because of all of the above, histopathology cannot become a point of care possibility like radiology and cytology is now. Specimens have to be shipped out to the lab, resulting in not only the workflow time delay but also in the transportation delay.
- Limited tissue depth visibility– pathologists only have one plane of tissue to evaluate per slide, with no potential for 3d reconstruction or visibility into deeper Z axes of the specimen.
- Nucleic acid degradation– the formalin fixation and subsequent workflow degrade DNA and RNA qualit, limiting opportunities for molecular diagnostics. This worsens over time as tissue is stored sitting in formalin and as paraffin blocks age on the shelf. As we move into more and more integration of molecular diagnostic testing, this will becomes an even larger problem.
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Labor shortage
In addition to the challenges of the workflow itself, there has been a shortage of histotechnologists for many years now, with current vacancy estimates ranging from 7-10%. Some classify the shortage as a “national crisis”. This shortage doesn’t seem to be improving, and it’s having real effects on pathology turnaround time and throughput capabilities.
Hold on, let’s take a first principles approach and reconsider the entire process
Why are we doing all of this? Not because it’s the best way, but because it’s the way we had to do it with the tools we had at the time. What if those constraints no longer applied?
Let’s step back and think about why we are doing what we are doing now in order to get a pathology image, and then rethink all of this in light of current tech.
With traditional “brightfield microscopy”, the goal is to create a process that allows us to cut tissue thin enough that we can evaluate its features when light is shined through it under a microscope. The image is viewed against a bright (white) background. The light’s interaction with tissue is important here, relying on things such as absorption and reflection to create enough contrast for us to visualize microscopic details. The ideal tissue section ends up being 3-6 micrometers thick. For reference, a red blood cell is only 6-8 microns in diameter. So we are cutting tissue very very thin! If we cut it any thicker, we’d lose the ability to discern microscopic features and eventually we’d get thick enough that visible light wouldn’t pass through.
The problem with cutting tissue this thin, however, is that fresh tissue is just too soft and squishy for us to be able to cut it thin in any reliable way. A good example to illustrate this is: imagine trying to slice a raw and thawed out chicken breast or raw cut of beef very very thin. Maybe you’re trying to cut thin slices to make into jerky. Or, if you’re vegan/vegetarian, imagine trying to cut a freshly baked hot loaf of bread into thin slices right as it comes out of the oven. It’s tough, right? You mangle the tissue up in the process and end up with an ugly slice without uniform thickness. So what do you do to get around the squishiness of the tissue? Well, you freeze the meat (or let the bread cool) and then you cut it while it’s still frozen or semi-frozen in a more solid state, rendering it much more cuttable. This is basically what we’re doing with almost the entirety of the histology workflow. We’re trying to figure out how we get that piece of tissue cut thin enough for brightfield microscopy. To do it, we embed the tissue in a block of wax that is much more firm and cuttable. But we can’t impregnate the tissue with wax and make it rigid when it is still in its normal state because it’s got too much water in it for wax to penetrate. Wax and water don’t mix! So we have to dehydrate the tissues to get the water out and make it possible for wax to impregnate, through a multi-step process we call “tissue processing”. But we also need another important thing to happen even before tissue processing. We need the tissue to be preserved in formalin. This stops the tissue autolysis (decomposition) process that naturally happens as soon as tissue is removed from the body, kills microbes, and stabilizes the tissue, preserving architectural features and rendering it firm and intact for microtome sectioning later on. Without formalin fixation, the tissue would rot before we even started the dehydration and embedding process. Oh yeah, and don’t forget that at the end of all of this, even after we get the ultra-thin slice of tissue we still have to stain it and coverslip it, and then store that slide somewhere.
Because traditional brightfield microscopy is limited by requiring these ultra thin slices of tissue, we have to go to extraordinary lengths to obtain them. And we’ve developed this entire elaborate histology workflow, requiring expensive equipment, trained lab technologists, and a lot of time, just to get to the final product of an image.
There Has to Be a Better Way
If a new technology could remove 90% of the friction in histopathology, why would we insist on keeping the old workflow intact? While some hybrid applications may persist, the ability to go direct-to-digital changes everything. In this context, it’s a no-brainer. We wouldn’t just pick the slide-free histology-we’d wonder how we ever did it any other way.
Slide-free histology eliminates processing, wax embedding, microtome sectioning, and slide creation. It may also eliminate the dependence on formalin fixation in some applications. This changes the entire histopathology paradigm and allows:
- Imaging fresh tissue directly without hours of fixation
- Rapid pathology reports in hours rather than days
- Affordable and rapid deployment of pathology options for geographically challenging areas.
- Preservation of molecular integrity for downstream testing (DNA/RNA sequencing, proteomics, etc)
- Elimination of processing artifacts caused by chemical fixation and sectioning
- Greater depth visualization and potential for 3D reconstructions
- More robust image analysis AI models
The Future
I hope you see why this is an exciting emerging technology and why there’s opportunity to radically change how we do pathology. But we also have to discuss the challenges ahead including what it will take for the industry to adopt a new workflow. It’s an uphill battle any time a new technology tries to disrupt the norm. Beyond industry inertia, adoption of slide-free histology faces structural, financial, and educational barriers that could slow adoption. Most importantly, we have to evaluate whether it’s diagnostically equivalent to traditional processes or pathologists won’t adopt it. So Next, in Part 2, we’ll dive into the handful of imaging methods being used for slide-free histology and discuss their pros, cons, challenges, and levels of maturity. In Part 3, we’ll cover the companies driving this transformation and who you should be watching.
Disclaimer
I am not currently employed by or affiliated with any company developing slide-free histology technology. However, I previously served as a scientific advisor for Smart Health Dx and hold equity in that company. My opinions in this article are my own and are based on my experience in pathology and my independent analysis of the field. This newsletter is intended for informational purposes only and does not constitute financial, medical, or investment advice.
References
Tanishq Mathew Abraham, Richard Levenson,
Current Landscape of Advanced Imaging Tools for Pathology Diagnostics, Modern Pathology, Volume 37, Issue 4, 2024, 100443, ISSN 0893-3952,
https://doi.org/10.1016/j.modpat.2024.100443.
Yehe Liu, Richard M. Levenson, Michael W. Jenkins,
Slide Over: Advances in Slide-Free Optical Microscopy as Drivers of Diagnostic Pathology,The American Journal of Pathology,Volume 192, Issue 2,2022,Pages 180-194,ISSN 0002-9440, https://doi.org/10.1016/j.ajpath.2021.10.010.
Manu Jain. Brian D. Robinson Binlin Wu Francesca Khani Sushmita Mukherjee; Exploring Multiphoton Microscopy as a Novel Tool to Differentiate Chromophobe Renal Cell Carcinoma From Oncocytoma in Fixed Tissue Sections. Arch Pathol Lab Med 1 March 2018; 142 (3): 383–390
Marcelus, H., & Packert, D. (2024). Addressing the histotechnologist shortage through improved classification and recognition. Journal of Histotechnology, 47(4), 143–145. https://doi.org/10.1080/01478885.2024.2424049
https://ascls.org/addressing-the-clinical-laboratory-workforce-shortage/